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Hasegawa Co Ltd mega v.6 program
Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the nucleotide sequences of the partials S genes. The tree was generated by the maximum likelihood method of the software <t>MEGA</t> v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not shown). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols, the Japanese strains prior to 2013 are marked by solid diamond symbols , and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols
Mega V.6 Program, supplied by Hasegawa Co Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mega+6+program/mega+v+6+program/pmc04668244-224-37-22
Average 90 stars, based on 1 article reviews
mega v.6 program - by Bioz Stars, 2026-09
90/100 stars

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1) Product Images from "US-like isolates of porcine epidemic diarrhea virus from Japanese outbreaks between 2013 and 2014"

Article Title: US-like isolates of porcine epidemic diarrhea virus from Japanese outbreaks between 2013 and 2014

Journal: SpringerPlus

doi: 10.1186/s40064-015-1552-z

Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the nucleotide sequences of the partials S genes. The tree was generated by the maximum likelihood method of the software MEGA v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not shown). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols, the Japanese strains prior to 2013 are marked by solid diamond symbols , and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols
Figure Legend Snippet: Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the nucleotide sequences of the partials S genes. The tree was generated by the maximum likelihood method of the software MEGA v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not shown). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols, the Japanese strains prior to 2013 are marked by solid diamond symbols , and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols

Techniques Used: Virus, Generated, Software

Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the ORF3 of PEDV. The tree was generated by the maximum likelihood method of the software MEGA v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not show). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols
Figure Legend Snippet: Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the ORF3 of PEDV. The tree was generated by the maximum likelihood method of the software MEGA v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not show). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols

Techniques Used: Virus, Generated, Software

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Article Snippet: Phylogenetic analysis was performed using the maximum likelihood method based on the Hasegawa–Kishino–Yano model with 1000 bootstrap replications using MEGA 6.0 software ( http://www.megasoftware.net/ , accessed on 1 September 2022) [ ].

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Article Snippet: Phylogenetic analysis was performed using the maximum likelihood method based on the Hasegawa–Kishino–Yano model with 1000 bootstrap replications using MEGA 6.0 software ( http://www.megasoftware.net/ , accessed on 1 September 2023) [ ].

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Software:

Article Title: Bacillus velezensis strain MBY2, a potential agent for the management of crown gall disease
Article Snippet: .. Phylogenies were reconstructed i) from p-distance matrices with the Neighbor Joining (NJ) method as implemented in the MEGA 6 software tool under pair-wise deletion of alignment gaps and missing data or ii) using the Maximum Likelihood (ML) method as implemented in the PhyML software tool [ ] using the Hasegawa-Kishino-Yano (HKY) model of nucleotide substitution [ ] under the assumption of a gamma-distribution-based model of rate heterogeneity [ ] allowing for eight rate categories. ..

Article Title: Evaluation of bacteriophage efficacy in reducing the impact of single and mixed infections with Escherichia coli and infectious bronchitis in chickens
Article Snippet: .. The tree was constructed with the MEGA 6 software [ ] using the nucleotide substitution of the Hasegawa-Kishino-Yano model with the gamma-distributed rate (with four rate categories) with bootstrap value based on 1000 replicates [ ]. ..

Comparison:

Article Title: The contrasting genetic patterns of two sympatric flying fox species from the Comoros and the implications for conservation
Article Snippet: Pteropus livingstonii and Pteropus seychellensis comorensis are endemic fruit bat species that are among the most threatened animals in the Comoros archipelago.. Both species are pollinators and seed dispersers of native and cultivated plants and are thus of crucial importance for the regeneration of natural forests as well as for cultivated plantations.. However, these species are subject to strong anthropogenic pressures and face one of the highest rates of natural habitat loss reported worldwide.

Selection:

Article Title: The contrasting genetic patterns of two sympatric flying fox species from the Comoros and the implications for conservation
Article Snippet: Pteropus livingstonii and Pteropus seychellensis comorensis are endemic fruit bat species that are among the most threatened animals in the Comoros archipelago.. Both species are pollinators and seed dispersers of native and cultivated plants and are thus of crucial importance for the regeneration of natural forests as well as for cultivated plantations.. However, these species are subject to strong anthropogenic pressures and face one of the highest rates of natural habitat loss reported worldwide.

Construct:

Article Title: Evaluation of bacteriophage efficacy in reducing the impact of single and mixed infections with Escherichia coli and infectious bronchitis in chickens
Article Snippet: .. The tree was constructed with the MEGA 6 software [ ] using the nucleotide substitution of the Hasegawa-Kishino-Yano model with the gamma-distributed rate (with four rate categories) with bootstrap value based on 1000 replicates [ ]. ..



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Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the nucleotide sequences of the partials S genes. The tree was generated by the maximum likelihood method of the software <t>MEGA</t> v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not shown). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols, the Japanese strains prior to 2013 are marked by solid diamond symbols , and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols
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Image Search Results


Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the nucleotide sequences of the partials S genes. The tree was generated by the maximum likelihood method of the software MEGA v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not shown). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols, the Japanese strains prior to 2013 are marked by solid diamond symbols , and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols

Journal: SpringerPlus

Article Title: US-like isolates of porcine epidemic diarrhea virus from Japanese outbreaks between 2013 and 2014

doi: 10.1186/s40064-015-1552-z

Figure Lengend Snippet: Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the nucleotide sequences of the partials S genes. The tree was generated by the maximum likelihood method of the software MEGA v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not shown). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols, the Japanese strains prior to 2013 are marked by solid diamond symbols , and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols

Article Snippet: Phylogenetic trees based on the nucleotide sequences of the partial S gene and ORF3 gene were constructed with maximum likelihood method using Hasegawa-Kishino-Yano substitution model with discrete Gamma distribution, and bootstrap tests of 1000 replicates in the MEGA v.6 program.

Techniques: Virus, Generated, Software

Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the ORF3 of PEDV. The tree was generated by the maximum likelihood method of the software MEGA v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not show). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols

Journal: SpringerPlus

Article Title: US-like isolates of porcine epidemic diarrhea virus from Japanese outbreaks between 2013 and 2014

doi: 10.1186/s40064-015-1552-z

Figure Lengend Snippet: Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the ORF3 of PEDV. The tree was generated by the maximum likelihood method of the software MEGA v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not show). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols

Article Snippet: Phylogenetic trees based on the nucleotide sequences of the partial S gene and ORF3 gene were constructed with maximum likelihood method using Hasegawa-Kishino-Yano substitution model with discrete Gamma distribution, and bootstrap tests of 1000 replicates in the MEGA v.6 program.

Techniques: Virus, Generated, Software